461 lines
17 KiB
C++
461 lines
17 KiB
C++
// Copyright 2004, 2005 The Trustees of Indiana University.
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// Distributed under the Boost Software License, Version 1.0.
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// (See accompanying file LICENSE_1_0.txt or copy at
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// http://www.boost.org/LICENSE_1_0.txt)
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// Authors: Douglas Gregor
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// Andrew Lumsdaine
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#ifndef BOOST_GRAPH_FRUCHTERMAN_REINGOLD_FORCE_DIRECTED_LAYOUT_HPP
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#define BOOST_GRAPH_FRUCHTERMAN_REINGOLD_FORCE_DIRECTED_LAYOUT_HPP
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#include <boost/config/no_tr1/cmath.hpp>
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#include <boost/graph/graph_traits.hpp>
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#include <boost/graph/named_function_params.hpp>
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#include <boost/graph/iteration_macros.hpp>
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#include <boost/graph/topology.hpp> // For topology concepts
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#include <boost/graph/detail/mpi_include.hpp>
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#include <vector>
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#include <list>
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#include <algorithm> // for std::min and std::max
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#include <numeric> // for std::accumulate
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#include <cmath> // for std::sqrt and std::fabs
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#include <functional>
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namespace boost
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{
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struct square_distance_attractive_force
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{
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template < typename Graph, typename T >
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T operator()(typename graph_traits< Graph >::edge_descriptor, T k, T d,
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const Graph&) const
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{
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return d * d / k;
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}
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};
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struct square_distance_repulsive_force
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{
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template < typename Graph, typename T >
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T operator()(typename graph_traits< Graph >::vertex_descriptor,
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typename graph_traits< Graph >::vertex_descriptor, T k, T d,
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const Graph&) const
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{
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return k * k / d;
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}
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};
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template < typename T > struct linear_cooling
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{
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typedef T result_type;
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linear_cooling(std::size_t iterations)
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: temp(T(iterations) / T(10)), step(0.1)
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{
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}
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linear_cooling(std::size_t iterations, T temp)
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: temp(temp), step(temp / T(iterations))
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{
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}
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T operator()()
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{
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T old_temp = temp;
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temp -= step;
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if (temp < T(0))
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temp = T(0);
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return old_temp;
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}
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private:
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T temp;
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T step;
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};
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struct all_force_pairs
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{
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template < typename Graph, typename ApplyForce >
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void operator()(const Graph& g, ApplyForce apply_force)
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{
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typedef typename graph_traits< Graph >::vertex_iterator vertex_iterator;
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vertex_iterator v, end;
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for (boost::tie(v, end) = vertices(g); v != end; ++v)
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{
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vertex_iterator u = v;
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for (++u; u != end; ++u)
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{
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apply_force(*u, *v);
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apply_force(*v, *u);
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}
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}
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}
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};
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template < typename Topology, typename PositionMap > struct grid_force_pairs
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{
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typedef typename property_traits< PositionMap >::value_type Point;
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BOOST_STATIC_ASSERT(Point::dimensions == 2);
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typedef typename Topology::point_difference_type point_difference_type;
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template < typename Graph >
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explicit grid_force_pairs(
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const Topology& topology, PositionMap position, const Graph& g)
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: topology(topology), position(position)
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{
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two_k = 2. * this->topology.volume(this->topology.extent())
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/ std::sqrt((double)num_vertices(g));
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}
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template < typename Graph, typename ApplyForce >
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void operator()(const Graph& g, ApplyForce apply_force)
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{
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typedef typename graph_traits< Graph >::vertex_iterator vertex_iterator;
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typedef
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typename graph_traits< Graph >::vertex_descriptor vertex_descriptor;
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typedef std::list< vertex_descriptor > bucket_t;
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typedef std::vector< bucket_t > buckets_t;
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std::size_t columns = std::size_t(topology.extent()[0] / two_k + 1.);
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std::size_t rows = std::size_t(topology.extent()[1] / two_k + 1.);
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buckets_t buckets(rows * columns);
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vertex_iterator v, v_end;
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for (boost::tie(v, v_end) = vertices(g); v != v_end; ++v)
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{
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std::size_t column = std::size_t(
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(get(position, *v)[0] + topology.extent()[0] / 2) / two_k);
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std::size_t row = std::size_t(
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(get(position, *v)[1] + topology.extent()[1] / 2) / two_k);
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if (column >= columns)
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column = columns - 1;
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if (row >= rows)
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row = rows - 1;
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buckets[row * columns + column].push_back(*v);
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}
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for (std::size_t row = 0; row < rows; ++row)
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for (std::size_t column = 0; column < columns; ++column)
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{
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bucket_t& bucket = buckets[row * columns + column];
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typedef typename bucket_t::iterator bucket_iterator;
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for (bucket_iterator u = bucket.begin(); u != bucket.end(); ++u)
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{
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// Repulse vertices in this bucket
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bucket_iterator v = u;
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for (++v; v != bucket.end(); ++v)
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{
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apply_force(*u, *v);
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apply_force(*v, *u);
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}
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std::size_t adj_start_row = row == 0 ? 0 : row - 1;
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std::size_t adj_end_row = row == rows - 1 ? row : row + 1;
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std::size_t adj_start_column = column == 0 ? 0 : column - 1;
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std::size_t adj_end_column
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= column == columns - 1 ? column : column + 1;
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for (std::size_t other_row = adj_start_row;
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other_row <= adj_end_row; ++other_row)
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for (std::size_t other_column = adj_start_column;
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other_column <= adj_end_column; ++other_column)
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if (other_row != row || other_column != column)
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{
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// Repulse vertices in this bucket
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bucket_t& other_bucket
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= buckets[other_row * columns
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+ other_column];
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for (v = other_bucket.begin();
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v != other_bucket.end(); ++v)
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{
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double dist = topology.distance(
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get(position, *u), get(position, *v));
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if (dist < two_k)
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apply_force(*u, *v);
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}
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}
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}
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}
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}
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private:
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const Topology& topology;
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PositionMap position;
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double two_k;
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};
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template < typename PositionMap, typename Topology, typename Graph >
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inline grid_force_pairs< Topology, PositionMap > make_grid_force_pairs(
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const Topology& topology, const PositionMap& position, const Graph& g)
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{
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return grid_force_pairs< Topology, PositionMap >(topology, position, g);
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}
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template < typename Graph, typename PositionMap, typename Topology >
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void scale_graph(const Graph& g, PositionMap position, const Topology& topology,
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typename Topology::point_type upper_left,
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typename Topology::point_type lower_right)
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{
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if (num_vertices(g) == 0)
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return;
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typedef typename Topology::point_type Point;
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typedef typename Topology::point_difference_type point_difference_type;
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// Find min/max ranges
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Point min_point = get(position, *vertices(g).first), max_point = min_point;
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BGL_FORALL_VERTICES_T(v, g, Graph)
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{
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min_point = topology.pointwise_min(min_point, get(position, v));
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max_point = topology.pointwise_max(max_point, get(position, v));
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}
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Point old_origin = topology.move_position_toward(min_point, 0.5, max_point);
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Point new_origin
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= topology.move_position_toward(upper_left, 0.5, lower_right);
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point_difference_type old_size = topology.difference(max_point, min_point);
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point_difference_type new_size
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= topology.difference(lower_right, upper_left);
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// Scale to bounding box provided
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BGL_FORALL_VERTICES_T(v, g, Graph)
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{
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point_difference_type relative_loc
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= topology.difference(get(position, v), old_origin);
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relative_loc = (relative_loc / old_size) * new_size;
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put(position, v, topology.adjust(new_origin, relative_loc));
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}
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}
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namespace detail
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{
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template < typename Topology, typename PropMap, typename Vertex >
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void maybe_jitter_point(const Topology& topology, const PropMap& pm,
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Vertex v, const typename Topology::point_type& p2)
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{
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double too_close = topology.norm(topology.extent()) / 10000.;
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if (topology.distance(get(pm, v), p2) < too_close)
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{
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put(pm, v,
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topology.move_position_toward(
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get(pm, v), 1. / 200, topology.random_point()));
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}
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}
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template < typename Topology, typename PositionMap,
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typename DisplacementMap, typename RepulsiveForce, typename Graph >
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struct fr_apply_force
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{
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typedef
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typename graph_traits< Graph >::vertex_descriptor vertex_descriptor;
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typedef typename Topology::point_type Point;
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typedef typename Topology::point_difference_type PointDiff;
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fr_apply_force(const Topology& topology, const PositionMap& position,
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const DisplacementMap& displacement, RepulsiveForce repulsive_force,
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double k, const Graph& g)
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: topology(topology)
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, position(position)
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, displacement(displacement)
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, repulsive_force(repulsive_force)
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, k(k)
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, g(g)
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{
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}
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void operator()(vertex_descriptor u, vertex_descriptor v)
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{
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if (u != v)
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{
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// When the vertices land on top of each other, move the
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// first vertex away from the boundaries.
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maybe_jitter_point(topology, position, u, get(position, v));
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double dist
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= topology.distance(get(position, u), get(position, v));
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typename Topology::point_difference_type dispv
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= get(displacement, v);
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if (dist == 0.)
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{
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for (std::size_t i = 0; i < Point::dimensions; ++i)
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{
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dispv[i] += 0.01;
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}
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}
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else
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{
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double fr = repulsive_force(u, v, k, dist, g);
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dispv += (fr / dist)
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* topology.difference(
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get(position, v), get(position, u));
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}
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put(displacement, v, dispv);
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}
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}
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private:
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const Topology& topology;
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PositionMap position;
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DisplacementMap displacement;
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RepulsiveForce repulsive_force;
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double k;
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const Graph& g;
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};
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} // end namespace detail
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template < typename Topology, typename Graph, typename PositionMap,
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typename AttractiveForce, typename RepulsiveForce, typename ForcePairs,
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typename Cooling, typename DisplacementMap >
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void fruchterman_reingold_force_directed_layout(const Graph& g,
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PositionMap position, const Topology& topology,
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AttractiveForce attractive_force, RepulsiveForce repulsive_force,
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ForcePairs force_pairs, Cooling cool, DisplacementMap displacement)
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{
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typedef typename graph_traits< Graph >::vertex_iterator vertex_iterator;
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typedef typename graph_traits< Graph >::vertex_descriptor vertex_descriptor;
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typedef typename graph_traits< Graph >::edge_iterator edge_iterator;
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double volume = topology.volume(topology.extent());
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// assume positions are initialized randomly
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double k = pow(volume / num_vertices(g),
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1. / (double)(Topology::point_difference_type::dimensions));
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detail::fr_apply_force< Topology, PositionMap, DisplacementMap,
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RepulsiveForce, Graph >
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apply_force(topology, position, displacement, repulsive_force, k, g);
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do
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{
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// Calculate repulsive forces
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vertex_iterator v, v_end;
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for (boost::tie(v, v_end) = vertices(g); v != v_end; ++v)
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put(displacement, *v, typename Topology::point_difference_type());
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force_pairs(g, apply_force);
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// Calculate attractive forces
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edge_iterator e, e_end;
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for (boost::tie(e, e_end) = edges(g); e != e_end; ++e)
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{
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vertex_descriptor v = source(*e, g);
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vertex_descriptor u = target(*e, g);
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// When the vertices land on top of each other, move the
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// first vertex away from the boundaries.
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::boost::detail::maybe_jitter_point(
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topology, position, u, get(position, v));
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typename Topology::point_difference_type delta
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= topology.difference(get(position, v), get(position, u));
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double dist = topology.distance(get(position, u), get(position, v));
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double fa = attractive_force(*e, k, dist, g);
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put(displacement, v, get(displacement, v) - (fa / dist) * delta);
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put(displacement, u, get(displacement, u) + (fa / dist) * delta);
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}
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if (double temp = cool())
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{
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// Update positions
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BGL_FORALL_VERTICES_T(v, g, Graph)
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{
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BOOST_USING_STD_MIN();
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BOOST_USING_STD_MAX();
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double disp_size = topology.norm(get(displacement, v));
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put(position, v,
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topology.adjust(get(position, v),
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get(displacement, v)
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* (min BOOST_PREVENT_MACRO_SUBSTITUTION(
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disp_size, temp)
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/ disp_size)));
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put(position, v, topology.bound(get(position, v)));
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}
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}
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else
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{
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break;
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}
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} while (true);
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}
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namespace detail
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{
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template < typename DisplacementMap > struct fr_force_directed_layout
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{
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template < typename Topology, typename Graph, typename PositionMap,
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typename AttractiveForce, typename RepulsiveForce,
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typename ForcePairs, typename Cooling, typename Param, typename Tag,
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typename Rest >
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static void run(const Graph& g, PositionMap position,
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const Topology& topology, AttractiveForce attractive_force,
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RepulsiveForce repulsive_force, ForcePairs force_pairs,
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Cooling cool, DisplacementMap displacement,
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const bgl_named_params< Param, Tag, Rest >&)
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{
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fruchterman_reingold_force_directed_layout(g, position, topology,
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attractive_force, repulsive_force, force_pairs, cool,
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displacement);
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}
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};
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template <> struct fr_force_directed_layout< param_not_found >
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{
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template < typename Topology, typename Graph, typename PositionMap,
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typename AttractiveForce, typename RepulsiveForce,
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typename ForcePairs, typename Cooling, typename Param, typename Tag,
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typename Rest >
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static void run(const Graph& g, PositionMap position,
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const Topology& topology, AttractiveForce attractive_force,
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RepulsiveForce repulsive_force, ForcePairs force_pairs,
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Cooling cool, param_not_found,
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const bgl_named_params< Param, Tag, Rest >& params)
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{
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typedef typename Topology::point_difference_type PointDiff;
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std::vector< PointDiff > displacements(num_vertices(g));
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fruchterman_reingold_force_directed_layout(g, position, topology,
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attractive_force, repulsive_force, force_pairs, cool,
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make_iterator_property_map(displacements.begin(),
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choose_const_pmap(
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get_param(params, vertex_index), g, vertex_index),
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PointDiff()));
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}
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};
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} // end namespace detail
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template < typename Topology, typename Graph, typename PositionMap,
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typename Param, typename Tag, typename Rest >
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void fruchterman_reingold_force_directed_layout(const Graph& g,
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PositionMap position, const Topology& topology,
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const bgl_named_params< Param, Tag, Rest >& params)
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{
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typedef typename get_param_type< vertex_displacement_t,
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bgl_named_params< Param, Tag, Rest > >::type D;
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detail::fr_force_directed_layout< D >::run(g, position, topology,
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choose_param(get_param(params, attractive_force_t()),
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square_distance_attractive_force()),
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choose_param(get_param(params, repulsive_force_t()),
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square_distance_repulsive_force()),
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choose_param(get_param(params, force_pairs_t()),
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make_grid_force_pairs(topology, position, g)),
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choose_param(
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get_param(params, cooling_t()), linear_cooling< double >(100)),
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get_param(params, vertex_displacement_t()), params);
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}
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template < typename Topology, typename Graph, typename PositionMap >
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void fruchterman_reingold_force_directed_layout(
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const Graph& g, PositionMap position, const Topology& topology)
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{
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fruchterman_reingold_force_directed_layout(g, position, topology,
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attractive_force(square_distance_attractive_force()));
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}
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} // end namespace boost
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#include BOOST_GRAPH_MPI_INCLUDE(<boost/graph/distributed/fruchterman_reingold.hpp>)
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#endif // BOOST_GRAPH_FRUCHTERMAN_REINGOLD_FORCE_DIRECTED_LAYOUT_HPP
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