989 lines
32 KiB
C++
989 lines
32 KiB
C++
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// Copyright Daniel Wallin 2007. Use, modification and distribution is
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// subject to the Boost Software License, Version 1.0. (See accompanying
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// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
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#ifndef BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP
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#define BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP
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#ifndef BOOST_GRAPH_USE_MPI
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#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included"
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#endif
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# include <boost/assert.hpp>
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# include <boost/lexical_cast.hpp>
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# include <boost/foreach.hpp>
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# include <boost/filesystem/path.hpp>
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# include <boost/filesystem/operations.hpp>
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# include <cctype>
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# include <fstream>
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namespace boost {
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namespace detail { namespace parallel
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{
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// Wraps a local descriptor, making it serializable.
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template <class Local>
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struct serializable_local_descriptor
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{
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serializable_local_descriptor()
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{}
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serializable_local_descriptor(Local local)
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: local(local)
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{}
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operator Local const&() const
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{
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return local;
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}
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bool operator==(serializable_local_descriptor const& other) const
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{
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return local == other.local;
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}
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bool operator<(serializable_local_descriptor const& other) const
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{
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return local < other.local;
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}
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template <class Archive>
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void serialize(Archive& ar, const unsigned int /*version*/)
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{
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ar & unsafe_serialize(local);
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}
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Local local;
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};
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template <class Vertex, class Properties>
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struct pending_edge
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{
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pending_edge(
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Vertex source, Vertex target
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, Properties properties, void* property_ptr
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)
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: source(source)
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, target(target)
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, properties(properties)
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, property_ptr(property_ptr)
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{}
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Vertex source;
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Vertex target;
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Properties properties;
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void* property_ptr;
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};
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inline bool is_digit(char c)
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{
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return std::isdigit(c) != 0;
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}
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inline std::vector<int>
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available_process_files(std::string const& filename)
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{
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if (!filesystem::exists(filename))
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return std::vector<int>();
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std::vector<int> result;
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for (filesystem::directory_iterator i(filename), end; i != end; ++i)
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{
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if (!filesystem::is_regular(*i))
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boost::throw_exception(std::runtime_error("directory contains non-regular entries"));
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std::string process_name = i->path().filename().string();
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for (std::string::size_type i = 0; i < process_name.size(); ++i)
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if (!is_digit(process_name[i]))
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boost::throw_exception(std::runtime_error("directory contains files with invalid names"));
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result.push_back(boost::lexical_cast<int>(process_name));
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}
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return result;
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}
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template <class Archive, class Tag, class T, class Base>
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void maybe_load_properties(
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Archive& ar, char const* name, property<Tag, T, Base>& properties)
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{
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ar >> serialization::make_nvp(name, get_property_value(properties, Tag()));
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maybe_load_properties(ar, name, static_cast<Base&>(properties));
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}
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template <class Archive>
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void maybe_load_properties(
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Archive&, char const*, no_property&)
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{}
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template <class Archive, typename Bundle>
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void maybe_load_properties(
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Archive& ar, char const* name, Bundle& bundle)
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{
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ar >> serialization::make_nvp(name, bundle);
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no_property prop;
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maybe_load_properties(ar, name, prop);
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}
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template <class Graph, class Archive, class VertexListS>
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struct graph_loader
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{
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typedef typename Graph::vertex_descriptor vertex_descriptor;
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typedef typename Graph::local_vertex_descriptor local_vertex_descriptor;
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typedef typename Graph::vertex_property_type vertex_property_type;
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typedef typename Graph::edge_descriptor edge_descriptor;
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typedef typename Graph::local_edge_descriptor local_edge_descriptor;
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typedef typename Graph::edge_property_type edge_property_type;
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typedef typename Graph::process_group_type process_group_type;
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typedef typename process_group_type::process_id_type process_id_type;
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typedef typename Graph::directed_selector directed_selector;
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typedef typename mpl::if_<
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is_same<VertexListS, defaultS>, vecS, VertexListS
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>::type vertex_list_selector;
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typedef pending_edge<vertex_descriptor, edge_property_type>
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pending_edge_type;
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typedef serializable_local_descriptor<local_vertex_descriptor>
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serializable_vertex_descriptor;
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graph_loader(Graph& g, Archive& ar)
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: m_g(g)
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, m_ar(ar)
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, m_pg(g.process_group())
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, m_requested_vertices(num_processes(m_pg))
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, m_remote_vertices(num_processes(m_pg))
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, m_property_ptrs(num_processes(m_pg))
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{
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g.clear();
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load_prefix();
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load_vertices();
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load_edges();
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ar >> make_nvp("distribution", m_g.distribution());
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}
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private:
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struct pending_in_edge
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{
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pending_in_edge(
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vertex_descriptor u, vertex_descriptor v, void* property_ptr
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)
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: u(u)
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, v(v)
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, property_ptr(property_ptr)
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{}
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vertex_descriptor u;
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vertex_descriptor v;
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void* property_ptr;
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};
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bool is_root() const
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{
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return process_id(m_pg) == 0;
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}
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template <class T>
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serialization::nvp<T> const make_nvp(char const* name, T& value) const
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{
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return serialization::nvp<T>(name, value);
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}
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void load_prefix();
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void load_vertices();
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template <class Anything>
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void maybe_load_and_store_local_vertex(Anything);
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void maybe_load_and_store_local_vertex(vecS);
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void load_edges();
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void load_in_edges(bidirectionalS);
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void load_in_edges(directedS);
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void add_pending_in_edge(
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vertex_descriptor u, vertex_descriptor v, void* property_ptr, vecS);
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template <class Anything>
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void add_pending_in_edge(
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vertex_descriptor u, vertex_descriptor v, void* property_ptr, Anything);
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template <class Anything>
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void add_edge(
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vertex_descriptor u, vertex_descriptor v
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, edge_property_type const& property, void* property_ptr, Anything);
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void add_edge(
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vertex_descriptor u, vertex_descriptor v
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, edge_property_type const& property, void* property_ptr, vecS);
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void add_remote_vertex_request(
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vertex_descriptor u, vertex_descriptor v, directedS);
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void add_remote_vertex_request(
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vertex_descriptor u, vertex_descriptor v, bidirectionalS);
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void add_in_edge(
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edge_descriptor const&, void*, directedS);
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void add_in_edge(
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edge_descriptor const& edge, void* old_property_ptr, bidirectionalS);
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void resolve_remote_vertices(directedS);
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void resolve_remote_vertices(bidirectionalS);
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vertex_descriptor resolve_remote_vertex(vertex_descriptor u) const;
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vertex_descriptor resolve_remote_vertex(vertex_descriptor u, vecS) const;
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template <class Anything>
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vertex_descriptor resolve_remote_vertex(vertex_descriptor u, Anything) const;
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void resolve_property_ptrs();
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void commit_pending_edges(vecS);
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template <class Anything>
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void commit_pending_edges(Anything);
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void commit_pending_in_edges(directedS);
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void commit_pending_in_edges(bidirectionalS);
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void* maybe_load_property_ptr(directedS) { return 0; }
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void* maybe_load_property_ptr(bidirectionalS);
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Graph& m_g;
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Archive& m_ar;
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process_group_type m_pg;
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std::vector<process_id_type> m_id_mapping;
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// Maps local vertices as loaded from the archive to
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// the ones actually added to the graph. Only used
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// when !vecS.
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std::map<local_vertex_descriptor, local_vertex_descriptor> m_local_vertices;
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// This is the list of remote vertex descriptors that we
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// are going to receive from other processes. This is
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// kept sorted so that we can determine the position of
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// the matching vertex descriptor in m_remote_vertices.
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std::vector<std::vector<serializable_vertex_descriptor> > m_requested_vertices;
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// This is the list of remote vertex descriptors that
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// we send and receive from other processes.
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std::vector<std::vector<serializable_vertex_descriptor> > m_remote_vertices;
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// ...
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std::vector<pending_edge_type> m_pending_edges;
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// The pending in-edges that will be added in the commit step, after
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// the remote vertex descriptors has been resolved. Only used
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// when bidirectionalS and !vecS.
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std::vector<pending_in_edge> m_pending_in_edges;
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std::vector<std::vector<unsafe_pair<void*,void*> > > m_property_ptrs;
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};
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template <class Graph, class Archive, class VertexListS>
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void graph_loader<Graph, Archive, VertexListS>::load_prefix()
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{
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typename process_group_type::process_size_type num_processes_;
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m_ar >> make_nvp("num_processes", num_processes_);
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if (num_processes_ != num_processes(m_pg))
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boost::throw_exception(std::runtime_error("number of processes mismatch"));
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process_id_type old_id;
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m_ar >> make_nvp("id", old_id);
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std::vector<typename Graph::distribution_type::size_type> mapping;
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m_ar >> make_nvp("mapping", mapping);
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// Fetch all the old id's from the other processes.
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std::vector<process_id_type> old_ids;
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all_gather(m_pg, &old_id, &old_id+1, old_ids);
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m_id_mapping.resize(num_processes(m_pg), -1);
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for (process_id_type i = 0; i < num_processes(m_pg); ++i)
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{
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# ifdef PBGL_SERIALIZE_DEBUG
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if (is_root())
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std::cout << i << " used to be " << old_ids[i] << "\n";
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# endif
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BOOST_ASSERT(m_id_mapping[old_ids[i]] == -1);
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m_id_mapping[old_ids[i]] = i;
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}
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std::vector<typename Graph::distribution_type::size_type> new_mapping(
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mapping.size());
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for (int i = 0; i < num_processes(m_pg); ++i)
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{
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new_mapping[mapping[old_ids[i]]] = i;
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}
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m_g.distribution().assign_mapping(
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new_mapping.begin(), new_mapping.end());
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}
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template <class Graph, class Archive, class VertexListS>
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void graph_loader<Graph, Archive, VertexListS>::load_vertices()
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{
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int V;
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m_ar >> BOOST_SERIALIZATION_NVP(V);
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# ifdef PBGL_SERIALIZE_DEBUG
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if (is_root())
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std::cout << "Loading vertices\n";
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# endif
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for (int i = 0; i < V; ++i)
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{
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maybe_load_and_store_local_vertex(vertex_list_selector());
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}
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}
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template <class Graph, class Archive, class VertexListS>
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template <class Anything>
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void graph_loader<Graph, Archive, VertexListS>::maybe_load_and_store_local_vertex(Anything)
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{
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// Load the original vertex descriptor
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local_vertex_descriptor local;
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m_ar >> make_nvp("local", unsafe_serialize(local));
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// Load the properties
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vertex_property_type property;
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detail::parallel::maybe_load_properties(m_ar, "vertex_property",
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property);
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// Add the vertex
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vertex_descriptor v(process_id(m_pg), add_vertex(property, m_g.base()));
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if (m_g.on_add_vertex)
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m_g.on_add_vertex(v, m_g);
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// Create the mapping from the "old" local descriptor to the new
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// local descriptor.
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m_local_vertices[local] = v.local;
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}
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template <class Graph, class Archive, class VertexListS>
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void graph_loader<Graph, Archive, VertexListS>::maybe_load_and_store_local_vertex(vecS)
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{
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// Load the properties
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vertex_property_type property;
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detail::parallel::maybe_load_properties(m_ar, "vertex_property",
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property);
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// Add the vertex
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vertex_descriptor v(process_id(m_pg),
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add_vertex(m_g.build_vertex_property(property),
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m_g.base()));
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if (m_g.on_add_vertex)
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m_g.on_add_vertex(v, m_g);
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}
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template <class Graph, class Archive, class VertexListS>
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void graph_loader<Graph, Archive, VertexListS>::load_edges()
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{
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int E;
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m_ar >> BOOST_SERIALIZATION_NVP(E);
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# ifdef PBGL_SERIALIZE_DEBUG
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if (is_root())
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std::cout << "Loading edges\n";
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# endif
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for (int i = 0; i < E; ++i)
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{
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local_vertex_descriptor local_src;
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process_id_type target_owner;
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local_vertex_descriptor local_tgt;
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m_ar >> make_nvp("source", unsafe_serialize(local_src));
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m_ar >> make_nvp("target_owner", target_owner);
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m_ar >> make_nvp("target", unsafe_serialize(local_tgt));
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process_id_type new_src_owner = process_id(m_pg);
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process_id_type new_tgt_owner = m_id_mapping[target_owner];
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vertex_descriptor source(new_src_owner, local_src);
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vertex_descriptor target(new_tgt_owner, local_tgt);
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edge_property_type properties;
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detail::parallel::maybe_load_properties(m_ar, "edge_property", properties);
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void* property_ptr = maybe_load_property_ptr(directed_selector());
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add_edge(source, target, properties, property_ptr, vertex_list_selector());
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}
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load_in_edges(directed_selector());
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commit_pending_edges(vertex_list_selector());
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}
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template <class Graph, class Archive, class VertexListS>
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void graph_loader<Graph, Archive, VertexListS>::load_in_edges(bidirectionalS)
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{
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std::size_t I;
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m_ar >> BOOST_SERIALIZATION_NVP(I);
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# ifdef PBGL_SERIALIZE_DEBUG
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if (is_root())
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std::cout << "Loading in-edges\n";
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# endif
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for (int i = 0; i < I; ++i)
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{
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process_id_type src_owner;
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local_vertex_descriptor local_src;
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local_vertex_descriptor local_target;
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void* property_ptr;
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m_ar >> make_nvp("src_owner", src_owner);
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m_ar >> make_nvp("source", unsafe_serialize(local_src));
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m_ar >> make_nvp("target", unsafe_serialize(local_target));
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m_ar >> make_nvp("property_ptr", unsafe_serialize(property_ptr));
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src_owner = m_id_mapping[src_owner];
|
||
|
|
||
|
vertex_descriptor u(src_owner, local_src);
|
||
|
vertex_descriptor v(process_id(m_pg), local_target);
|
||
|
|
||
|
add_pending_in_edge(u, v, property_ptr, vertex_list_selector());
|
||
|
}
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::load_in_edges(directedS)
|
||
|
{}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_pending_in_edge(
|
||
|
vertex_descriptor u, vertex_descriptor v, void* property_ptr, vecS)
|
||
|
{
|
||
|
m_pending_in_edges.push_back(pending_in_edge(u,v,property_ptr));
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
template <class Anything>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_pending_in_edge(
|
||
|
vertex_descriptor u, vertex_descriptor v, void* property_ptr, Anything)
|
||
|
{
|
||
|
// u and v represent the out-edge here, meaning v is local
|
||
|
// to us, and u is always remote.
|
||
|
m_pending_in_edges.push_back(pending_in_edge(u,v,property_ptr));
|
||
|
add_remote_vertex_request(v, u, bidirectionalS());
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
template <class Anything>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_edge(
|
||
|
vertex_descriptor u, vertex_descriptor v
|
||
|
, edge_property_type const& property, void* property_ptr, Anything)
|
||
|
{
|
||
|
m_pending_edges.push_back(pending_edge_type(u, v, property, property_ptr));
|
||
|
add_remote_vertex_request(u, v, directed_selector());
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_remote_vertex_request(
|
||
|
vertex_descriptor u, vertex_descriptor v, directedS)
|
||
|
{
|
||
|
// We have to request the remote vertex.
|
||
|
m_requested_vertices[owner(v)].push_back(local(v));
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_remote_vertex_request(
|
||
|
vertex_descriptor u, vertex_descriptor v, bidirectionalS)
|
||
|
{
|
||
|
// If the edge spans to another process, we know
|
||
|
// that that process has a matching in-edge, so
|
||
|
// we can just send our vertex. No requests
|
||
|
// necessary.
|
||
|
if (owner(v) != m_g.processor())
|
||
|
{
|
||
|
m_remote_vertices[owner(v)].push_back(local(u));
|
||
|
m_requested_vertices[owner(v)].push_back(local(v));
|
||
|
}
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_edge(
|
||
|
vertex_descriptor u, vertex_descriptor v
|
||
|
, edge_property_type const& property, void* property_ptr, vecS)
|
||
|
{
|
||
|
std::pair<local_edge_descriptor, bool> inserted =
|
||
|
detail::parallel::add_local_edge(
|
||
|
local(u), local(v)
|
||
|
, m_g.build_edge_property(property), m_g.base());
|
||
|
BOOST_ASSERT(inserted.second);
|
||
|
put(edge_target_processor_id, m_g.base(), inserted.first, owner(v));
|
||
|
|
||
|
edge_descriptor e(owner(u), owner(v), true, inserted.first);
|
||
|
|
||
|
if (inserted.second && m_g.on_add_edge)
|
||
|
m_g.on_add_edge(e, m_g);
|
||
|
|
||
|
add_in_edge(e, property_ptr, directed_selector());
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_in_edge(
|
||
|
edge_descriptor const&, void*, directedS)
|
||
|
{}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::add_in_edge(
|
||
|
edge_descriptor const& edge, void* old_property_ptr, bidirectionalS)
|
||
|
{
|
||
|
if (owner(target(edge, m_g)) == m_g.processor())
|
||
|
{
|
||
|
detail::parallel::stored_in_edge<local_edge_descriptor>
|
||
|
e(m_g.processor(), local(edge));
|
||
|
boost::graph_detail::push(get(
|
||
|
vertex_in_edges, m_g.base())[local(target(edge, m_g))], e);
|
||
|
}
|
||
|
else
|
||
|
{
|
||
|
// We send the (old,new) property pointer pair to
|
||
|
// the remote process. This could be optimized to
|
||
|
// only send the new one -- the ordering can be
|
||
|
// made implicit because the old pointer value is
|
||
|
// stored on the remote process.
|
||
|
//
|
||
|
// Doing that is a little bit more complicated, but
|
||
|
// in case it turns out it's important we can do it.
|
||
|
void* property_ptr = local(edge).get_property();
|
||
|
m_property_ptrs[owner(target(edge, m_g))].push_back(
|
||
|
unsafe_pair<void*,void*>(old_property_ptr, property_ptr));
|
||
|
}
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::resolve_property_ptrs()
|
||
|
{
|
||
|
# ifdef PBGL_SERIALIZE_DEBUG
|
||
|
if (is_root())
|
||
|
std::cout << "Resolving property pointers\n";
|
||
|
# endif
|
||
|
|
||
|
for (int i = 0; i < num_processes(m_pg); ++i)
|
||
|
{
|
||
|
std::sort(
|
||
|
m_property_ptrs[i].begin(), m_property_ptrs[i].end());
|
||
|
}
|
||
|
|
||
|
boost::parallel::inplace_all_to_all(m_pg, m_property_ptrs);
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertices(directedS)
|
||
|
{
|
||
|
for (int i = 0; i < num_processes(m_pg); ++i)
|
||
|
{
|
||
|
std::sort(m_requested_vertices[i].begin(), m_requested_vertices[i].end());
|
||
|
}
|
||
|
|
||
|
boost::parallel::inplace_all_to_all(
|
||
|
m_pg, m_requested_vertices, m_remote_vertices);
|
||
|
|
||
|
for (int i = 0; i < num_processes(m_pg); ++i)
|
||
|
{
|
||
|
BOOST_FOREACH(serializable_vertex_descriptor& u, m_remote_vertices[i])
|
||
|
{
|
||
|
u = m_local_vertices[u];
|
||
|
}
|
||
|
}
|
||
|
|
||
|
boost::parallel::inplace_all_to_all(m_pg, m_remote_vertices);
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertices(bidirectionalS)
|
||
|
{
|
||
|
# ifdef PBGL_SERIALIZE_DEBUG
|
||
|
if (is_root())
|
||
|
std::cout << "Resolving remote vertices\n";
|
||
|
# endif
|
||
|
|
||
|
for (int i = 0; i < num_processes(m_pg); ++i)
|
||
|
{
|
||
|
std::sort(m_requested_vertices[i].begin(), m_requested_vertices[i].end());
|
||
|
std::sort(m_remote_vertices[i].begin(), m_remote_vertices[i].end());
|
||
|
|
||
|
BOOST_FOREACH(serializable_vertex_descriptor& u, m_remote_vertices[i])
|
||
|
{
|
||
|
u = m_local_vertices[u];
|
||
|
}
|
||
|
}
|
||
|
|
||
|
boost::parallel::inplace_all_to_all(m_pg, m_remote_vertices);
|
||
|
|
||
|
for (int i = 0; i < num_processes(m_pg); ++i)
|
||
|
BOOST_ASSERT(m_remote_vertices[i].size() == m_requested_vertices[i].size());
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_edges(vecS)
|
||
|
{
|
||
|
commit_pending_in_edges(directed_selector());
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
template <class Anything>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_edges(Anything)
|
||
|
{
|
||
|
resolve_remote_vertices(directed_selector());
|
||
|
|
||
|
BOOST_FOREACH(pending_edge_type const& e, m_pending_edges)
|
||
|
{
|
||
|
vertex_descriptor u = resolve_remote_vertex(e.source);
|
||
|
vertex_descriptor v = resolve_remote_vertex(e.target);
|
||
|
add_edge(u, v, e.properties, e.property_ptr, vecS());
|
||
|
}
|
||
|
|
||
|
commit_pending_in_edges(directed_selector());
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_in_edges(directedS)
|
||
|
{}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void graph_loader<Graph, Archive, VertexListS>::commit_pending_in_edges(bidirectionalS)
|
||
|
{
|
||
|
resolve_property_ptrs();
|
||
|
|
||
|
BOOST_FOREACH(pending_in_edge const& e, m_pending_in_edges)
|
||
|
{
|
||
|
vertex_descriptor u = resolve_remote_vertex(e.u, vertex_list_selector());
|
||
|
vertex_descriptor v = resolve_remote_vertex(e.v, vertex_list_selector());
|
||
|
|
||
|
typedef detail::parallel::stored_in_edge<local_edge_descriptor> stored_edge;
|
||
|
|
||
|
std::vector<unsafe_pair<void*,void*> >::iterator i = std::lower_bound(
|
||
|
m_property_ptrs[owner(u)].begin()
|
||
|
, m_property_ptrs[owner(u)].end()
|
||
|
, unsafe_pair<void*,void*>(e.property_ptr, 0)
|
||
|
);
|
||
|
|
||
|
if (i == m_property_ptrs[owner(u)].end()
|
||
|
|| i->first != e.property_ptr)
|
||
|
{
|
||
|
BOOST_ASSERT(false);
|
||
|
}
|
||
|
|
||
|
local_edge_descriptor local_edge(local(u), local(v), i->second);
|
||
|
stored_edge edge(owner(u), local_edge);
|
||
|
boost::graph_detail::push(
|
||
|
get(vertex_in_edges, m_g.base())[local(v)], edge);
|
||
|
}
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor
|
||
|
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex(
|
||
|
vertex_descriptor u) const
|
||
|
{
|
||
|
if (owner(u) == process_id(m_pg))
|
||
|
{
|
||
|
return vertex_descriptor(
|
||
|
process_id(m_pg), m_local_vertices.find(local(u))->second);
|
||
|
}
|
||
|
|
||
|
typename std::vector<serializable_vertex_descriptor>::const_iterator
|
||
|
i = std::lower_bound(
|
||
|
m_requested_vertices[owner(u)].begin()
|
||
|
, m_requested_vertices[owner(u)].end()
|
||
|
, serializable_vertex_descriptor(local(u))
|
||
|
);
|
||
|
|
||
|
if (i == m_requested_vertices[owner(u)].end()
|
||
|
|| *i != local(u))
|
||
|
{
|
||
|
BOOST_ASSERT(false);
|
||
|
}
|
||
|
|
||
|
local_vertex_descriptor local =
|
||
|
m_remote_vertices[owner(u)][m_requested_vertices[owner(u)].end() - i];
|
||
|
return vertex_descriptor(owner(u), local);
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor
|
||
|
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex(
|
||
|
vertex_descriptor u, vecS) const
|
||
|
{
|
||
|
return u;
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
template <class Anything>
|
||
|
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor
|
||
|
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex(
|
||
|
vertex_descriptor u, Anything) const
|
||
|
{
|
||
|
return resolve_remote_vertex(u);
|
||
|
}
|
||
|
|
||
|
template <class Graph, class Archive, class VertexListS>
|
||
|
void*
|
||
|
graph_loader<Graph, Archive, VertexListS>::maybe_load_property_ptr(bidirectionalS)
|
||
|
{
|
||
|
void* ptr;
|
||
|
m_ar >> make_nvp("property_ptr", unsafe_serialize(ptr));
|
||
|
return ptr;
|
||
|
}
|
||
|
|
||
|
template <class Archive, class D>
|
||
|
void maybe_save_local_descriptor(Archive& ar, D const&, vecS)
|
||
|
{}
|
||
|
|
||
|
template <class Archive, class D, class NotVecS>
|
||
|
void maybe_save_local_descriptor(Archive& ar, D const& d, NotVecS)
|
||
|
{
|
||
|
ar << serialization::make_nvp(
|
||
|
"local", unsafe_serialize(const_cast<D&>(d)));
|
||
|
}
|
||
|
|
||
|
template <class Archive>
|
||
|
void maybe_save_properties(
|
||
|
Archive&, char const*, no_property const&)
|
||
|
{}
|
||
|
|
||
|
template <class Archive, class Tag, class T, class Base>
|
||
|
void maybe_save_properties(
|
||
|
Archive& ar, char const* name, property<Tag, T, Base> const& properties)
|
||
|
{
|
||
|
ar & serialization::make_nvp(name, get_property_value(properties, Tag()));
|
||
|
maybe_save_properties(ar, name, static_cast<Base const&>(properties));
|
||
|
}
|
||
|
|
||
|
template <class Archive, class Graph>
|
||
|
void save_in_edges(Archive& ar, Graph const& g, directedS)
|
||
|
{}
|
||
|
|
||
|
// We need to save the edges in the base edge
|
||
|
// list, and the in_edges that are stored in the
|
||
|
// vertex_in_edges vertex property.
|
||
|
template <class Archive, class Graph>
|
||
|
void save_in_edges(Archive& ar, Graph const& g, bidirectionalS)
|
||
|
{
|
||
|
typedef typename Graph::process_group_type
|
||
|
process_group_type;
|
||
|
typedef typename process_group_type::process_id_type
|
||
|
process_id_type;
|
||
|
typedef typename graph_traits<
|
||
|
Graph>::vertex_descriptor vertex_descriptor;
|
||
|
typedef typename vertex_descriptor::local_descriptor_type
|
||
|
local_vertex_descriptor;
|
||
|
typedef typename graph_traits<
|
||
|
Graph>::edge_descriptor edge_descriptor;
|
||
|
|
||
|
process_id_type id = g.processor();
|
||
|
|
||
|
std::vector<edge_descriptor> saved_in_edges;
|
||
|
|
||
|
BGL_FORALL_VERTICES_T(v, g, Graph)
|
||
|
{
|
||
|
BOOST_FOREACH(edge_descriptor const& e, in_edges(v, g))
|
||
|
{
|
||
|
// Only save the in_edges that isn't owned by this process.
|
||
|
if (owner(e) == id)
|
||
|
continue;
|
||
|
|
||
|
saved_in_edges.push_back(e);
|
||
|
}
|
||
|
}
|
||
|
|
||
|
std::size_t I = saved_in_edges.size();
|
||
|
ar << BOOST_SERIALIZATION_NVP(I);
|
||
|
|
||
|
BOOST_FOREACH(edge_descriptor const& e, saved_in_edges)
|
||
|
{
|
||
|
process_id_type src_owner = owner(source(e,g));
|
||
|
local_vertex_descriptor local_src = local(source(e,g));
|
||
|
local_vertex_descriptor local_target = local(target(e,g));
|
||
|
void* property_ptr = local(e).get_property();
|
||
|
|
||
|
using serialization::make_nvp;
|
||
|
|
||
|
ar << make_nvp("src_owner", src_owner);
|
||
|
ar << make_nvp("source", unsafe_serialize(local_src));
|
||
|
ar << make_nvp("target", unsafe_serialize(local_target));
|
||
|
ar << make_nvp("property_ptr", unsafe_serialize(property_ptr));
|
||
|
}
|
||
|
}
|
||
|
|
||
|
template <class Archive, class Edge>
|
||
|
void maybe_save_property_ptr(Archive&, Edge const&, directedS)
|
||
|
{}
|
||
|
|
||
|
template <class Archive, class Edge>
|
||
|
void maybe_save_property_ptr(Archive& ar, Edge const& e, bidirectionalS)
|
||
|
{
|
||
|
void* ptr = local(e).get_property();
|
||
|
ar << serialization::make_nvp("property_ptr", unsafe_serialize(ptr));
|
||
|
}
|
||
|
|
||
|
template <class Archive, class Graph, class DirectedS>
|
||
|
void save_edges(Archive& ar, Graph const& g, DirectedS)
|
||
|
{
|
||
|
typedef typename Graph::process_group_type
|
||
|
process_group_type;
|
||
|
typedef typename process_group_type::process_id_type
|
||
|
process_id_type;
|
||
|
typedef typename graph_traits<
|
||
|
Graph>::vertex_descriptor vertex_descriptor;
|
||
|
|
||
|
typedef typename Graph::edge_property_type edge_property_type;
|
||
|
|
||
|
int E = num_edges(g);
|
||
|
ar << BOOST_SERIALIZATION_NVP(E);
|
||
|
|
||
|
// For *directed* graphs, we can just save
|
||
|
// the edge list and be done.
|
||
|
//
|
||
|
// For *bidirectional* graphs, we need to also
|
||
|
// save the "vertex_in_edges" property map,
|
||
|
// because it might contain in-edges that
|
||
|
// are not locally owned.
|
||
|
BGL_FORALL_EDGES_T(e, g, Graph)
|
||
|
{
|
||
|
vertex_descriptor src(source(e, g));
|
||
|
vertex_descriptor tgt(target(e, g));
|
||
|
|
||
|
typename vertex_descriptor::local_descriptor_type
|
||
|
local_u(local(src));
|
||
|
typename vertex_descriptor::local_descriptor_type
|
||
|
local_v(local(tgt));
|
||
|
|
||
|
process_id_type target_owner = owner(tgt);
|
||
|
|
||
|
using serialization::make_nvp;
|
||
|
|
||
|
ar << make_nvp("source", unsafe_serialize(local_u));
|
||
|
ar << make_nvp("target_owner", target_owner);
|
||
|
ar << make_nvp("target", unsafe_serialize(local_v));
|
||
|
|
||
|
maybe_save_properties(
|
||
|
ar, "edge_property"
|
||
|
, static_cast<edge_property_type const&>(get(edge_all_t(), g, e))
|
||
|
);
|
||
|
|
||
|
maybe_save_property_ptr(ar, e, DirectedS());
|
||
|
}
|
||
|
|
||
|
save_in_edges(ar, g, DirectedS());
|
||
|
}
|
||
|
|
||
|
}} // namespace detail::parallel
|
||
|
|
||
|
template <PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
|
||
|
template <class IStreamConstructibleArchive>
|
||
|
void PBGL_DISTRIB_ADJLIST_TYPE::load(std::string const& filename)
|
||
|
{
|
||
|
process_group_type pg = process_group();
|
||
|
process_id_type id = process_id(pg);
|
||
|
|
||
|
synchronize(pg);
|
||
|
|
||
|
std::vector<int> disk_files = detail::parallel::available_process_files(filename);
|
||
|
std::sort(disk_files.begin(), disk_files.end());
|
||
|
|
||
|
// Negotiate which process gets which file. Serialized.
|
||
|
std::vector<int> consumed_files;
|
||
|
int picked_file = -1;
|
||
|
|
||
|
if (id > 0)
|
||
|
receive_oob(pg, id-1, 0, consumed_files);
|
||
|
|
||
|
std::sort(consumed_files.begin(), consumed_files.end());
|
||
|
std::vector<int> available_files;
|
||
|
std::set_difference(
|
||
|
disk_files.begin(), disk_files.end()
|
||
|
, consumed_files.begin(), consumed_files.end()
|
||
|
, std::back_inserter(available_files)
|
||
|
);
|
||
|
|
||
|
if (available_files.empty())
|
||
|
boost::throw_exception(std::runtime_error("no file available"));
|
||
|
|
||
|
// back() used for debug purposes. Making sure the
|
||
|
// ranks are shuffled.
|
||
|
picked_file = available_files.back();
|
||
|
|
||
|
# ifdef PBGL_SERIALIZE_DEBUG
|
||
|
std::cout << id << " picked " << picked_file << "\n";
|
||
|
# endif
|
||
|
|
||
|
consumed_files.push_back(picked_file);
|
||
|
|
||
|
if (id < num_processes(pg) - 1)
|
||
|
send_oob(pg, id+1, 0, consumed_files);
|
||
|
|
||
|
std::string local_filename = filename + "/" +
|
||
|
lexical_cast<std::string>(picked_file);
|
||
|
|
||
|
std::ifstream in(local_filename.c_str(), std::ios_base::binary);
|
||
|
IStreamConstructibleArchive ar(in);
|
||
|
|
||
|
detail::parallel::graph_loader<
|
||
|
graph_type, IStreamConstructibleArchive, InVertexListS
|
||
|
> loader(*this, ar);
|
||
|
|
||
|
# ifdef PBGL_SERIALIZE_DEBUG
|
||
|
std::cout << "Process " << id << " done loading.\n";
|
||
|
# endif
|
||
|
|
||
|
synchronize(pg);
|
||
|
}
|
||
|
|
||
|
template <PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
|
||
|
template <class OStreamConstructibleArchive>
|
||
|
void PBGL_DISTRIB_ADJLIST_TYPE::save(std::string const& filename) const
|
||
|
{
|
||
|
typedef typename config_type::VertexListS vertex_list_selector;
|
||
|
|
||
|
process_group_type pg = process_group();
|
||
|
process_id_type id = process_id(pg);
|
||
|
|
||
|
if (filesystem::exists(filename) && !filesystem::is_directory(filename))
|
||
|
boost::throw_exception(std::runtime_error("entry exists, but is not a directory"));
|
||
|
|
||
|
filesystem::remove_all(filename);
|
||
|
filesystem::create_directory(filename);
|
||
|
|
||
|
synchronize(pg);
|
||
|
|
||
|
std::string local_filename = filename + "/" +
|
||
|
lexical_cast<std::string>(id);
|
||
|
|
||
|
std::ofstream out(local_filename.c_str(), std::ios_base::binary);
|
||
|
OStreamConstructibleArchive ar(out);
|
||
|
|
||
|
using serialization::make_nvp;
|
||
|
|
||
|
typename process_group_type::process_size_type num_processes_ = num_processes(pg);
|
||
|
ar << make_nvp("num_processes", num_processes_);
|
||
|
ar << BOOST_SERIALIZATION_NVP(id);
|
||
|
ar << make_nvp("mapping", this->distribution().mapping());
|
||
|
|
||
|
int V = num_vertices(*this);
|
||
|
ar << BOOST_SERIALIZATION_NVP(V);
|
||
|
|
||
|
BGL_FORALL_VERTICES_T(v, *this, graph_type)
|
||
|
{
|
||
|
local_vertex_descriptor local_descriptor(local(v));
|
||
|
detail::parallel::maybe_save_local_descriptor(
|
||
|
ar, local_descriptor, vertex_list_selector());
|
||
|
detail::parallel::maybe_save_properties(
|
||
|
ar, "vertex_property"
|
||
|
, static_cast<vertex_property_type const&>(get(vertex_all_t(), *this, v))
|
||
|
);
|
||
|
}
|
||
|
|
||
|
detail::parallel::save_edges(ar, *this, directed_selector());
|
||
|
|
||
|
ar << make_nvp("distribution", this->distribution());
|
||
|
}
|
||
|
|
||
|
} // namespace boost
|
||
|
|
||
|
#endif // BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP
|
||
|
|